No. words: 1291; after pruning: 1265


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:658)  575  0.17 0.34 0.00  MoSU008F_F05_BF201560At02P005G04G101F1_037.ab1        2   597 (0)  C MoSU008R_F05_BF201560At02P005G04G101R1_037.ab1   (35)   659    62 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C MoSU008R_F05_BF201560At02P005G04G101R1_037.ab1   694 
   54    MoSU008F_F05_BF201560At02P005G04G101F1_037.ab1    18 
  199  C MoSU008R_F05_BF201560At02P005G04G101R1_037.ab1   496 
  203    MoSU008F_F05_BF201560At02P005G04G101F1_037.ab1   167 
  423  C MoSU008R_F05_BF201560At02P005G04G101R1_037.ab1   272 
  443    MoSU008F_F05_BF201560At02P005G04G101F1_037.ab1   407 
  455  C MoSU008R_F05_BF201560At02P005G04G101R1_037.ab1   240 
Contig length: old 694, new 694

Contig length: old 694, new 694
New start: 0