No. words: 1648; after pruning: 1608


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:669)  647  0.15 0.45 0.00  MoSU008F_H05_BF201560Ld02P005G04G101F1_033.ab1        1   669 (153)  C MoSU008R_H05_BF201560Ld02P005G04G101R1_033.ab1   (154)   672     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C MoSU008R_H05_BF201560Ld02P005G04G101R1_033.ab1   826 
  176    MoSU008F_H05_BF201560Ld02P005G04G101F1_033.ab1    20 
  188  C MoSU008R_H05_BF201560Ld02P005G04G101R1_033.ab1   639 
  198    MoSU008F_H05_BF201560Ld02P005G04G101F1_033.ab1    41 
  718  C MoSU008R_H05_BF201560Ld02P005G04G101R1_033.ab1   109 
  730    MoSU008F_H05_BF201560Ld02P005G04G101F1_033.ab1   573 
  738  C MoSU008R_H05_BF201560Ld02P005G04G101R1_033.ab1    89 
  812    MoSU008F_H05_BF201560Ld02P005G04G101F1_033.ab1   655 
Contig length: old 978, new 979

Contig length: old 979, new 979
New start: 0