No. words: 1611; after pruning: 1585


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:685)  662  0.00 0.29 0.15  MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1        1   686 (86)  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   (152)   687     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  332 nodes

 168 str. conn. components

Path
    1  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   839 
  175    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1    21 
  191  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   649 
  195    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1    41 
  315  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   525 
  359    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1   205 
  679  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   161 
  687    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1   533 
  711  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   129 
  731    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1   577 
  735  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1   105 
  811    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1   657 
  819  C MoSU008R_C06_BF201560Ld05P005G04G101R1_044.ab1    21 
  823    MoSU008F_C06_BF201560Ld05P005G04G101F1_044.ab1   669 
Contig length: old 925, new 926

Contig length: old 926, new 926
New start: 0