No. words: 1427; after pruning: 1401


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:669)  647  0.00 0.45 0.00  MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1        1   669 (51)  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1   (35)   672     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1   707 
   79    MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1    41 
   83  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1   625 
   87    MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1    49 
  431  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1   277 
  567    MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1   529 
  583  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1   125 
  611    MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1   573 
  619  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1    89 
  679    MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1   641 
  687  C MoSU008R_A05_BF201560Tu01P005G04G101R1_047.ab1    21 
  691    MoSU008F_A05_BF201560Tu01P005G04G101F1_047.ab1   653 
Contig length: old 757, new 758

Contig length: old 758, new 758
New start: 0