No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:
30     2
31     4
32     2
62     4
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:386)  363  0.26 0.52 0.26  MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1        1   387 (488)  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   (59)   388     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   447 
  145    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1    84 
  149  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   299 
  245    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   184 
  249  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   199 
  281    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   220 
  289  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   159 
  293    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   232 
  297  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   151 
  313    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   252 
  317  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   131 
  333    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   272 
  337  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1   111 
  357    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   296 
  377  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1    71 
  401    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   340 
  405  C MoSU022R_C03_BF201644As01P005C05P005C111R1_027.ab1    43 
  409    MoSU022F_C03_BF201644As01P005C05P005C111F1_027.ab1   348 
Contig length: old 935, new 936

Contig length: old 936, new 936
New start: 0