No. words: 1131; after pruning: 1105


Histogram of relative pair offsets, for read pairs with multiple alignments:
30     2
32     2
62     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.7 (1,1:396)  373  0.00 0.25 0.51  MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1        1   394 (160)  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   (180)   397     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   577 
  230    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1    49 
  242  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   336 
  254    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1    73 
  258  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   320 
  274    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1    93 
  286  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   292 
  294    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1   113 
  298  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   280 
  322    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1   141 
  334  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   244 
  338    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1   157 
  354  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   224 
  362    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1   181 
  366  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   212 
  374    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1   193 
  406  C MoSU022R_G03_BF201644Ld01P005C05P005C111R1_019.ab1   172 
  410    MoSU022F_G03_BF201644Ld01P005C05P005C111F1_019.ab1   229 
Contig length: old 734, new 735

Contig length: old 735, new 735
New start: 0