No. words: 1712; after pruning: 1686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:999)  699  0.14 0.00 0.00  MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1      134   845 (0)  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   (0)   867   156 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1    MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1     1 
  447  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   554 
  455    MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1   455 
  479  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   522 
  519    MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1   519 
  599  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   402 
  603    MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1   603 
  619  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   382 
  627    MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1   627 
  631  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   370 
  715    MoSU014F_D05_BF201699As02P018E05P018E111F1_041.ab1   715 
  719  C MoSU014R_D05_BF201699As02P018E05P018E111R1_041.ab1   282 
Contig length: old 1000, new 1000

Contig length: old 1000, new 1000
New start: 0