No. words: 1342; after pruning: 1316


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.1 (1,1:786)  405  4.68 1.17 0.39  MoSU014F_F05_BF201699At02P018E05P018E111F1_037.ab1      275   787 (38)  C MoSU014R_F05_BF201699At02P018E05P018E111R1_037.ab1   (0)   517     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    MoSU014F_F05_BF201699At02P018E05P018E111F1_037.ab1     1 
  605  C MoSU014R_F05_BF201699At02P018E05P018E111R1_037.ab1   182 
  633    MoSU014F_F05_BF201699At02P018E05P018E111F1_037.ab1   633 
  637  C MoSU014R_F05_BF201699At02P018E05P018E111R1_037.ab1   150 
  641    MoSU014F_F05_BF201699At02P018E05P018E111F1_037.ab1   641 
  645  C MoSU014R_F05_BF201699At02P018E05P018E111R1_037.ab1   142 
  773    MoSU014F_F05_BF201699At02P018E05P018E111F1_037.ab1   773 
Contig length: old 825, new 825

Contig length: old 825, new 825
New start: 0