No. words: 1239; after pruning: 1213


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:563)  535  0.89 0.00 0.00  MoSU011F_E01_BF201699Td01P005G02P020D071F1_007.ab1        1   564 (58)  C MoSU011R_E01_BF201699Td01P005G02P020D071R1_007.ab1   (53)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU011R_E01_BF201699Td01P005G02P020D071R1_007.ab1   617 
   57    MoSU011F_E01_BF201699Td01P005G02P020D071F1_007.ab1     4 
   65  C MoSU011R_E01_BF201699Td01P005G02P020D071R1_007.ab1   553 
   97    MoSU011F_E01_BF201699Td01P005G02P020D071F1_007.ab1    44 
  101  C MoSU011R_E01_BF201699Td01P005G02P020D071R1_007.ab1   517 
  117    MoSU011F_E01_BF201699Td01P005G02P020D071F1_007.ab1    64 
  137  C MoSU011R_E01_BF201699Td01P005G02P020D071R1_007.ab1   481 
  141    MoSU011F_E01_BF201699Td01P005G02P020D071F1_007.ab1    88 
  345  C MoSU011R_E01_BF201699Td01P005G02P020D071R1_007.ab1   273 
  357    MoSU011F_E01_BF201699Td01P005G02P020D071F1_007.ab1   304 
Contig length: old 675, new 675

Contig length: old 675, new 675
New start: 0