No. words: 1230; after pruning: 1204


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:563)  532  0.53 0.18 0.18  MoSU011F_E03_BF201699Td03P005G02P020D071F1_023.ab1        1   564 (56)  C MoSU011R_E03_BF201699Td03P005G02P020D071R1_023.ab1   (46)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C MoSU011R_E03_BF201699Td03P005G02P020D071R1_023.ab1   610 
  514    MoSU011F_E03_BF201699Td03P005G02P020D071F1_023.ab1   468 
  518  C MoSU011R_E03_BF201699Td03P005G02P020D071R1_023.ab1    93 
  526    MoSU011F_E03_BF201699Td03P005G02P020D071F1_023.ab1   480 
  542  C MoSU011R_E03_BF201699Td03P005G02P020D071R1_023.ab1    69 
  550    MoSU011F_E03_BF201699Td03P005G02P020D071F1_023.ab1   504 
Contig length: old 666, new 666

Contig length: old 666, new 666
New start: 0