No. words: 1242; after pruning: 1216


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:570)  552  0.00 0.18 0.00  MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1        1   571 (52)  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1   (47)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1   619 
  114    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1    66 
  122  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1   498 
  138    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1    90 
  146  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1   474 
  326    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   278 
  338  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1   282 
  526    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   478 
  530  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1    90 
  534    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   486 
  538  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1    82 
  558    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   510 
  562  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1    58 
  578    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   530 
  582  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1    38 
  590    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   542 
  594  C MoSU011R_E06_BF201699Td06P005G02P020D071R1_040.ab1    26 
  606    MoSU011F_E06_BF201699Td06P005G02P020D071F1_040.ab1   558 
Contig length: old 671, new 671

Contig length: old 671, new 671
New start: 0