No. words: 1280; after pruning: 1254


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:597)  583  0.00 0.17 0.00  MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1        1   598 (43)  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   (40)   599     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   639 
  144    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   103 
  148  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   492 
  188    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   147 
  328  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   312 
  344    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   303 
  368  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   272 
  384    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   343 
  404  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   236 
  468    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   427 
  492  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   148 
  500    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   459 
  540  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1   100 
  548    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   507 
  608  C MoSU021R_A05_BF201699Td09P005G02P020C081R1_047.ab1    32 
  612    MoSU021F_A05_BF201699Td09P005G02P020C081F1_047.ab1   571 
Contig length: old 682, new 682

Contig length: old 682, new 682
New start: 0