No. words: 1176; after pruning: 1150


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:569)  542  0.35 0.18 0.00  MoSU011F_E09_BF201699Td09P005G02P020D071F1_071.ab1        1   566 (0)  C MoSU011R_E09_BF201699Td09P005G02P020D071R1_071.ab1   (39)   571     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C MoSU011R_E09_BF201699Td09P005G02P020D071R1_071.ab1   610 
  529    MoSU011F_E09_BF201699Td09P005G02P020D071F1_071.ab1   489 
  541  C MoSU011R_E09_BF201699Td09P005G02P020D071R1_071.ab1    70 
  569    MoSU011F_E09_BF201699Td09P005G02P020D071F1_071.ab1   529 
  584  C MoSU011R_E09_BF201699Td09P005G02P020D071R1_071.ab1    27 
Contig length: old 610, new 610

Contig length: old 610, new 610
New start: 0