No. words: 1450; after pruning: 1424


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.3 (1,1:1018)  402  0.93 0.23 0.23  MoSU003F_D03_BF292870As02P005H02H081F1_026.ab1      251   678 (0)  C MoSU003R_D03_BF292870As02P005H02H081R1_026.ab1   (3)   769   342 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1    MoSU003F_D03_BF292870As02P005H02H081F1_026.ab1     1 
  440  C MoSU003R_D03_BF292870As02P005H02H081R1_026.ab1   580 
  444    MoSU003F_D03_BF292870As02P005H02H081F1_026.ab1   444 
  452  C MoSU003R_D03_BF292870As02P005H02H081R1_026.ab1   568 
  460    MoSU003F_D03_BF292870As02P005H02H081F1_026.ab1   460 
  468  C MoSU003R_D03_BF292870As02P005H02H081R1_026.ab1   552 
  480    MoSU003F_D03_BF292870As02P005H02H081F1_026.ab1   480 
  488  C MoSU003R_D03_BF292870As02P005H02H081R1_026.ab1   532 
  500    MoSU003F_D03_BF292870As02P005H02H081F1_026.ab1   500 
  516  C MoSU003R_D03_BF292870As02P005H02H081R1_026.ab1   504 
Contig length: old 1019, new 1019

Contig length: old 1019, new 1019
New start: 0