No. words: 1551; after pruning: 1525


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:889)  636  0.61 0.15 0.00  MoSU022F_D09_BF292870As02P018F05P018F111F1_073.ab1      102   761 (0)  C MoSU022R_D09_BF292870As02P018F05P018F111R1_073.ab1   (0)   790   130 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1    MoSU022F_D09_BF292870As02P018F05P018F111F1_073.ab1     1 
  159  C MoSU022R_D09_BF292870As02P018F05P018F111R1_073.ab1   733 
  163    MoSU022F_D09_BF292870As02P018F05P018F111F1_073.ab1   163 
  354  C MoSU022R_D09_BF292870As02P018F05P018F111R1_073.ab1   538 
  362    MoSU022F_D09_BF292870As02P018F05P018F111F1_073.ab1   362 
  382  C MoSU022R_D09_BF292870As02P018F05P018F111R1_073.ab1   510 
  422    MoSU022F_D09_BF292870As02P018F05P018F111F1_073.ab1   422 
  426  C MoSU022R_D09_BF292870As02P018F05P018F111R1_073.ab1   466 
  442    MoSU022F_D09_BF292870As02P018F05P018F111F1_073.ab1   442 
  446  C MoSU022R_D09_BF292870As02P018F05P018F111R1_073.ab1   446 
Contig length: old 890, new 891

Contig length: old 891, new 891
New start: 0