No. words: 1568; after pruning: 1528


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:875)  676  0.14 0.29 0.00  MoSU003F_E03_BF292870At01P005H02H081F1_019.ab1       54   743 (0)  C MoSU003R_E03_BF292870At01P005H02H081R1_019.ab1   (0)   825   134 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    MoSU003F_E03_BF292870At01P005H02H081F1_019.ab1     1 
  338  C MoSU003R_E03_BF292870At01P005H02H081R1_019.ab1   539 
  342    MoSU003F_E03_BF292870At01P005H02H081F1_019.ab1   342 
  390  C MoSU003R_E03_BF292870At01P005H02H081R1_019.ab1   487 
  394    MoSU003F_E03_BF292870At01P005H02H081F1_019.ab1   394 
  406  C MoSU003R_E03_BF292870At01P005H02H081R1_019.ab1   471 
  418    MoSU003F_E03_BF292870At01P005H02H081F1_019.ab1   418 
  422  C MoSU003R_E03_BF292870At01P005H02H081R1_019.ab1   455 
Contig length: old 876, new 876

Contig length: old 876, new 876
New start: 0