No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:879)  646  0.00 0.00 0.00  MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1      174   824 (0)  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   (0)   707    57 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1     1 
  337  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   544 
  341    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   341 
  345  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   536 
  349    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   349 
  377  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   504 
  385    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   385 
  393  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   488 
  401    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   401 
  421  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   460 
  433    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   433 
  441  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   440 
  453    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   453 
  461  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   420 
  469    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   469 
  477  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   404 
  537    MoSU022F_E09_BF292870At01P018F05P018F111F1_071.ab1   537 
  541  C MoSU022R_E09_BF292870At01P018F05P018F111R1_071.ab1   340 
Contig length: old 880, new 880

Contig length: old 880, new 880
New start: 0