No. words: 1281; after pruning: 1241


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:603)  594  0.17 0.00 0.00  MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1        1   604 (31)  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   (42)   604     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   646 
   46    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1     4 
   54  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   593 
   62    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1    20 
   78  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   569 
   86    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1    44 
   94  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   553 
   98    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1    56 
  163  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   484 
  167    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   125 
  171  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   476 
  199    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   157 
  203  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   444 
  219    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   177 
  243  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   404 
  259    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   217 
  271  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   376 
  279    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   237 
  291  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   356 
  315    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   273 
  323  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   324 
  391    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   349 
  395  C MoSU003R_F03_BF292870At02P005H02H081R1_027.ab1   252 
  635    MoSU003F_F03_BF292870At02P005H02H081F1_027.ab1   593 
Contig length: old 677, new 677

Contig length: old 677, new 677
New start: 0