No. words: 1331; after pruning: 1305


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:604)  588  0.00 0.17 0.17  MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1        1   605 (56)  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   (65)   605     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   670 
  102    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1    36 
  106  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   565 
  174    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   108 
  202  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   469 
  230    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   164 
  254  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   417 
  270    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   204 
  286  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   385 
  294    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   228 
  298  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   373 
  346    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   280 
  402  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   269 
  450    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   384 
  458  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   213 
  478    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   412 
  514  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   157 
  538    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   472 
  546  C MoSU022R_F09_BF292870At02P018F05P018F111R1_069.ab1   125 
  554    MoSU022F_F09_BF292870At02P018F05P018F111F1_069.ab1   488 
Contig length: old 726, new 727

Contig length: old 727, new 727
New start: 0