No. words: 1437; after pruning: 1411


Histogram of relative pair offsets, for read pairs with multiple alignments:
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.7 (1,1:1358)   76  0.00 0.00 0.00  MoSU003F_G03_BF292870Ld01P005H02H081F1_020.ab1      645   722 (0)  C MoSU003R_G03_BF292870Ld01P005H02H081R1_020.ab1   (0)   715   638 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  40 nodes

 22 str. conn. components

Path
    1    MoSU003F_G03_BF292870Ld01P005H02H081F1_020.ab1     1 
  649  C MoSU003R_G03_BF292870Ld01P005H02H081R1_020.ab1   711 
  657    MoSU003F_G03_BF292870Ld01P005H02H081F1_020.ab1   657 
  661  C MoSU003R_G03_BF292870Ld01P005H02H081R1_020.ab1   699 
  677    MoSU003F_G03_BF292870Ld01P005H02H081F1_020.ab1   677 
  693  C MoSU003R_G03_BF292870Ld01P005H02H081R1_020.ab1   667 
Contig length: old 1359, new 1359

Contig length: old 1359, new 1359
New start: 0