No. words: 1557; after pruning: 1517


Histogram of relative pair offsets, for read pairs with multiple alignments:
36     2
68     2
99    16

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 2.9 (1,1:1387)  157  1.81 0.00 0.00  MoSU003F_H03_BF292870Ld02P005H02H081F1_028.ab1      586   751 (0)  C MoSU003R_H03_BF292870Ld02P005H02H081R1_028.ab1   (3)   803   638 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    MoSU003F_H03_BF292870Ld02P005H02H081F1_028.ab1     1 
  655  C MoSU003R_H03_BF292870Ld02P005H02H081R1_028.ab1   734 
  667    MoSU003F_H03_BF292870Ld02P005H02H081F1_028.ab1   667 
  671  C MoSU003R_H03_BF292870Ld02P005H02H081R1_028.ab1   718 
Contig length: old 1388, new 1388

Contig length: old 1388, new 1388
New start: 0 
S Change at: 730; seg lengths: entry 1, contig 1