No. words: 1369; after pruning: 1343


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   20   -4.0 -4.0 (1,1:1272)   53  5.48 2.74 0.00  MoSU022F_H09_BF292870Ld02P018F05P018F111F1_065.ab1      702   774 (20)  C MoSU022R_H09_BF292870Ld02P018F05P018F111R1_065.ab1   (1)   574   500 *
  Worst pair: offset 1 
LLR breakdown: discreps: -2.4 (<20 part: -2.4 (#=6), >20:0.0 (#=0); in HQ: -2.4, out HQ 0.0), match: 1.5  trail: -2.9  lead: -0.3  total: -4.1   53  5.48 2.74 0.00  MoSU022F_H09_BF292870Ld02P018F05P018F111F1_065.ab1      702   774 (20)  C MoSU022R_H09_BF292870Ld02P018F05P018F111R1_065.ab1   (1)   574   500 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
20       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  28 nodes

 16 str. conn. components

Path
    1    MoSU022F_H09_BF292870Ld02P018F05P018F111F1_065.ab1     1 
  719  C MoSU022R_H09_BF292870Ld02P018F05P018F111R1_065.ab1   557 
  743    MoSU022F_H09_BF292870Ld02P018F05P018F111F1_065.ab1   741 
  759  C MoSU022R_H09_BF292870Ld02P018F05P018F111R1_065.ab1   517 
Contig length: old 1273, new 1275

Contig length: old 1275, new 1275
New start: 0 
S Change at: 729; seg lengths: entry 1, contig 1