No. words: 1472; after pruning: 1432


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:872)  587  0.17 0.00 0.17  MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1      120   718 (0)  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   (0)   754   157 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1    MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1     1 
  338  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   536 
  346    MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1   346 
  386  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   488 
  390    MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1   390 
  402  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   472 
  414    MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1   414 
  422  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   452 
  442    MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1   442 
  446  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   428 
  562    MoSU003F_B03_BF292870Tu02P005H02H081F1_025.ab1   562 
  566  C MoSU003R_B03_BF292870Tu02P005H02H081R1_025.ab1   308 
Contig length: old 873, new 873

Contig length: old 873, new 873
New start: 0