No. words: 1597; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:1241)  324  1.41 0.00 0.00  MoSU035F_C07_BF293371As01P019D04P019D101F1_059.ab1      442   796 (0)  C MoSU035R_C07_BF293371As01P019D04P019D101R1_059.ab1   (0)   801   447 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1    MoSU035F_C07_BF293371As01P019D04P019D101F1_059.ab1     1 
  565  C MoSU035R_C07_BF293371As01P019D04P019D101R1_059.ab1   678 
  588    MoSU035F_C07_BF293371As01P019D04P019D101F1_059.ab1   588 
  592  C MoSU035R_C07_BF293371As01P019D04P019D101R1_059.ab1   651 
  596    MoSU035F_C07_BF293371As01P019D04P019D101F1_059.ab1   596 
  604  C MoSU035R_C07_BF293371As01P019D04P019D101R1_059.ab1   639 
Contig length: old 1242, new 1242

Contig length: old 1242, new 1242
New start: 0