No. words: 1717; after pruning: 1691


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:1242)  438  0.63 0.21 0.00  MoSU035F_A07_BF293371Tu01P019D04P019D101F1_063.ab1      446   918 (0)  C MoSU035R_A07_BF293371Tu01P019D04P019D101R1_063.ab1   (0)   799   326 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1    MoSU035F_A07_BF293371Tu01P019D04P019D101F1_063.ab1     1 
  574  C MoSU035R_A07_BF293371Tu01P019D04P019D101R1_063.ab1   670 
  582    MoSU035F_A07_BF293371Tu01P019D04P019D101F1_063.ab1   582 
  598  C MoSU035R_A07_BF293371Tu01P019D04P019D101R1_063.ab1   646 
  606    MoSU035F_A07_BF293371Tu01P019D04P019D101F1_063.ab1   606 
  610  C MoSU035R_A07_BF293371Tu01P019D04P019D101R1_063.ab1   634 
  686    MoSU035F_A07_BF293371Tu01P019D04P019D101F1_063.ab1   686 
  702  C MoSU035R_A07_BF293371Tu01P019D04P019D101R1_063.ab1   542 
Contig length: old 1243, new 1243

Contig length: old 1243, new 1243
New start: 0