No. words: 594; after pruning: 568


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -3.3 -3.3 (1,1:272)  156 12.13 0.00 0.37  MoSU024F_A07_BF293421Tu01P019F03P019F091F1_063.ab1        2   273 (36)  C MoSU024R_A07_BF293421Tu01P019F03P019F091R1_063.ab1   (14)   271     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.5 (<20 part: -8.5 (#=34), >20:0.0 (#=0); in HQ: -8.5, out HQ 0.0), match: 5.3  lead: -0.2  total: -3.4  156 12.13 0.00 0.37  MoSU024F_A07_BF293421Tu01P019F03P019F091F1_063.ab1        2   273 (36)  C MoSU024R_A07_BF293421Tu01P019F03P019F091R1_063.ab1   (14)   271     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.3       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C MoSU024R_A07_BF293421Tu01P019F03P019F091R1_063.ab1   285 
   18    MoSU024F_A07_BF293421Tu01P019F03P019F091F1_063.ab1     5 
   22  C MoSU024R_A07_BF293421Tu01P019F03P019F091R1_063.ab1   264 
   26    MoSU024F_A07_BF293421Tu01P019F03P019F091F1_063.ab1    13 
   65  C MoSU024R_A07_BF293421Tu01P019F03P019F091R1_063.ab1   222 
   83    MoSU024F_A07_BF293421Tu01P019F03P019F091F1_063.ab1    70 
   98  C MoSU024R_A07_BF293421Tu01P019F03P019F091R1_063.ab1   189 
  280    MoSU024F_A07_BF293421Tu01P019F03P019F091F1_063.ab1   267 
Contig length: old 321, new 322

Contig length: old 322, new 322
New start: 0 
S Change at: 72; seg lengths: entry 4, contig 4
S Change at: 114; seg lengths: entry 4, contig 4