No. words: 1415; after pruning: 1389


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:1065)  338  0.00 0.00 0.00  MoSU010F_F07_BF428955At02P018B02P018B081F1_053.ab1      354   702 (0)  C MoSU010R_F07_BF428955At02P018B02P018B081R1_053.ab1   (0)   713   365 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1    MoSU010F_F07_BF428955At02P018B02P018B081F1_053.ab1     1 
  448  C MoSU010R_F07_BF428955At02P018B02P018B081R1_053.ab1   619 
  452    MoSU010F_F07_BF428955At02P018B02P018B081F1_053.ab1   452 
  500  C MoSU010R_F07_BF428955At02P018B02P018B081R1_053.ab1   567 
  512    MoSU010F_F07_BF428955At02P018B02P018B081F1_053.ab1   512 
  516  C MoSU010R_F07_BF428955At02P018B02P018B081R1_053.ab1   551 
  528    MoSU010F_F07_BF428955At02P018B02P018B081F1_053.ab1   528 
  532  C MoSU010R_F07_BF428955At02P018B02P018B081R1_053.ab1   535 
  544    MoSU010F_F07_BF428955At02P018B02P018B081F1_053.ab1   544 
  552  C MoSU010R_F07_BF428955At02P018B02P018B081R1_053.ab1   515 
Contig length: old 1066, new 1066

Contig length: old 1066, new 1066
New start: 0