No. words: 1401; after pruning: 1375


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:1001)  387  0.00 0.00 0.00  MoSU010F_H07_BF428955Ld02P018B02P018B081F1_049.ab1      223   621 (0)  C MoSU010R_H07_BF428955Ld02P018B02P018B081R1_049.ab1   (0)   780   382 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1    MoSU010F_H07_BF428955Ld02P018B02P018B081F1_049.ab1     1 
  450  C MoSU010R_H07_BF428955Ld02P018B02P018B081R1_049.ab1   553 
  458    MoSU010F_H07_BF428955Ld02P018B02P018B081F1_049.ab1   458 
  466  C MoSU010R_H07_BF428955Ld02P018B02P018B081R1_049.ab1   537 
  474    MoSU010F_H07_BF428955Ld02P018B02P018B081F1_049.ab1   474 
  482  C MoSU010R_H07_BF428955Ld02P018B02P018B081R1_049.ab1   521 
Contig length: old 1002, new 1002

Contig length: old 1002, new 1002
New start: 0