No. words: 1565; after pruning: 1539


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:1011)  535  0.18 0.18 0.00  MoSU007F_B04_BF428955Ld04P015A02A081F1_030.ab1      235   786 (0)  C MoSU007R_B04_BF428955Ld04P015A02A081R1_030.ab1   (0)   779   227 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    MoSU007F_B04_BF428955Ld04P015A02A081F1_030.ab1     1 
  474  C MoSU007R_B04_BF428955Ld04P015A02A081R1_030.ab1   540 
  482    MoSU007F_B04_BF428955Ld04P015A02A081F1_030.ab1   482 
  498  C MoSU007R_B04_BF428955Ld04P015A02A081R1_030.ab1   516 
Contig length: old 1012, new 1013

Contig length: old 1013, new 1013
New start: 0