No. words: 1186; after pruning: 1160


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.5 (1,1:1015)  156  1.18 0.00 0.00  MoSU010F_C08_BF428955Ld05P018B02P018B081F1_060.ab1      352   521 (0)  C MoSU010R_C08_BF428955Ld05P018B02P018B081R1_060.ab1   (0)   665   496 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    MoSU010F_C08_BF428955Ld05P018B02P018B081F1_060.ab1     1 
  383  C MoSU010R_C08_BF428955Ld05P018B02P018B081R1_060.ab1   634 
  391    MoSU010F_C08_BF428955Ld05P018B02P018B081F1_060.ab1   391 
  415  C MoSU010R_C08_BF428955Ld05P018B02P018B081R1_060.ab1   602 
  419    MoSU010F_C08_BF428955Ld05P018B02P018B081F1_060.ab1   419 
  427  C MoSU010R_C08_BF428955Ld05P018B02P018B081R1_060.ab1   590 
Contig length: old 1016, new 1016

Contig length: old 1016, new 1016
New start: 0