No. words: 1018; after pruning: 992


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.9 (1,1:860)  140  1.27 0.00 0.64  MoSU004F_C11_BF473825As01P005F01F071F1_082.ab1       67   223 (0)  C MoSU004R_C11_BF473825As01P005F01F071R1_082.ab1   (0)   795   640 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  72 nodes

 38 str. conn. components

Path
    1    MoSU004F_C11_BF473825As01P005F01F071F1_082.ab1     1 
  166  C MoSU004R_C11_BF473825As01P005F01F071R1_082.ab1   696 
  190    MoSU004F_C11_BF473825As01P005F01F071F1_082.ab1   190 
  194  C MoSU004R_C11_BF473825As01P005F01F071R1_082.ab1   668 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0