No. words: 1606; after pruning: 1580


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.5 (1,1:902)  674  0.14 0.00 0.00  MoSU004F_E11_BF473825At01P005F01F071F1_083.ab1       42   744 (0)  C MoSU004R_E11_BF473825At01P005F01F071R1_083.ab1   (0)   862   160 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  350 nodes

 177 str. conn. components

Path
    1    MoSU004F_E11_BF473825At01P005F01F071F1_083.ab1     1 
  409  C MoSU004R_E11_BF473825At01P005F01F071R1_083.ab1   495 
  413    MoSU004F_E11_BF473825At01P005F01F071F1_083.ab1   413 
  425  C MoSU004R_E11_BF473825At01P005F01F071R1_083.ab1   479 
  429    MoSU004F_E11_BF473825At01P005F01F071F1_083.ab1   429 
  441  C MoSU004R_E11_BF473825At01P005F01F071R1_083.ab1   463 
  453    MoSU004F_E11_BF473825At01P005F01F071F1_083.ab1   453 
  457  C MoSU004R_E11_BF473825At01P005F01F071R1_083.ab1   447 
  489    MoSU004F_E11_BF473825At01P005F01F071F1_083.ab1   489 
  493  C MoSU004R_E11_BF473825At01P005F01F071R1_083.ab1   411 
Contig length: old 903, new 903

Contig length: old 903, new 903
New start: 0