No. words: 1183; after pruning: 1157


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 11.6 (1,1:565)  530  0.00 0.18 0.18  MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1        1   564 (24)  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   (29)   566     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   595 
   65    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1    35 
  109  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   487 
  113    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1    83 
  129  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   467 
  141    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   111 
  145  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   451 
  161    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   131 
  177  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   419 
  201    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   171 
  205  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   391 
  221    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   191 
  229  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   367 
  241    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   211 
  245  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1   351 
  537    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   507 
  559  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1    38 
  567    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   537 
  583  C MoSU006R_E07_BF473825At01P015B05B111R1_051.ab1    14 
  587    MoSU006F_E07_BF473825At01P015B05B111F1_051.ab1   557 
Contig length: old 617, new 618

Contig length: old 618, new 618
New start: 0