No. words: 1180; after pruning: 1154


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:563)  537  0.00 0.00 0.00  MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1        1   564 (25)  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   (27)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   591 
   63    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1    36 
   87  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   505 
   91    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1    64 
  107  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   485 
  119    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1    92 
  127  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   465 
  155    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   128 
  163  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   429 
  167    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   140 
  175  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   417 
  195    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   168 
  279  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   313 
  327    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   300 
  335  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   257 
  339    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   312 
  351  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   241 
  403    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   376 
  455  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   137 
  459    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   432 
  487  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1   105 
  495    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   468 
  507  C MoSU006R_F07_BF473825At02P015B05B111R1_059.ab1    85 
  523    MoSU006F_F07_BF473825At02P015B05B111F1_059.ab1   496 
Contig length: old 616, new 616

Contig length: old 616, new 616
New start: 0