No. words: 1196; after pruning: 1170


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:563)  526  0.53 0.18 0.00  MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1        1   563 (38)  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   (31)   564     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   595 
   59    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1    27 
   91  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   505 
   95    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1    63 
  111  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   485 
  119    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1    87 
  191  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   405 
  203    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   171 
  259  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   337 
  283    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   251 
  287  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   309 
  291    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   259 
  295  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   301 
  311    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   279 
  404  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   192 
  408    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   376 
  456  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1   140 
  460    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   428 
  564  C MoSU006R_A07_BF473825Tu01P015B05B111R1_049.ab1    32 
  568    MoSU006F_A07_BF473825Tu01P015B05B111F1_049.ab1   536 
Contig length: old 632, new 633

Contig length: old 633, new 633
New start: 0