No. words: 1033; after pruning: 1007


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:500)  488  0.00 0.40 0.00  MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1        1   500 (13)  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   (18)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   520 
   62    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1    42 
   66  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   455 
   78    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1    58 
  102  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   419 
  106    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1    86 
  130  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   391 
  138    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   118 
  142  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   379 
  154    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   134 
  166  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   355 
  182    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   162 
  190  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   331 
  194    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   174 
  214  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   307 
  218    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   198 
  222  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   299 
  234    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   214 
  238  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   283 
  242    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   222 
  262  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   259 
  290    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   270 
  302  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   219 
  326    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   306 
  382  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   139 
  394    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   374 
  406  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1   115 
  410    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   390 
  430  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1    91 
  434    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   414 
  442  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1    79 
  446    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   426 
  450  C MoSU006R_C09_BF474966As01P015C05C111R1_066.ab1    71 
  454    MoSU006F_C09_BF474966As01P015C05C111F1_066.ab1   434 
Contig length: old 532, new 533

Contig length: old 533, new 533
New start: 0