No. words: 1227; after pruning: 1201


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.6 (1,1:469)  459  0.00 0.21 0.00  MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1        5   470 (145)  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   (145)   467     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   612 
  169    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1    27 
  173  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   440 
  177    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1    35 
  181  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   432 
  189    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1    47 
  205  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   408 
  209    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1    67 
  213  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   400 
  217    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1    75 
  225  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   388 
  233    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1    91 
  241  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   372 
  245    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1   103 
  253  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   360 
  305    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1   163 
  325  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   288 
  329    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1   187 
  409  C MoSU006R_E10_BF474966Ld07P015C05C111R1_071.ab1   204 
  441    MoSU006F_E10_BF474966Ld07P015C05C111F1_071.ab1   299 
Contig length: old 757, new 757

Contig length: old 757, new 757
New start: 0