No. words: 1238; after pruning: 1212


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.3 (1,1:476)  468  0.00 0.21 0.00  MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1        3   477 (151)  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1   (134)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1   610 
  238    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   105 
  242  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1   369 
  442    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   309 
  450  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1   161 
  454    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   321 
  498  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1   113 
  502    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   369 
  514  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1    97 
  518    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   385 
  538  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1    73 
  542    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   409 
  566  C MoSU006R_H10_BF474966Ld10P015C05C111R1_080.ab1    45 
  570    MoSU006F_H10_BF474966Ld10P015C05C111F1_080.ab1   437 
Contig length: old 761, new 761

Contig length: old 761, new 761
New start: 0