No. words: 837; after pruning: 811


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 6.7 (1,1:378)  364  0.00 0.00 0.27  MoSU012F_E05_BF474966Td05P020A06P005F081F1_039.ab1        9   379 (37)  C MoSU012R_E05_BF474966Td05P020A06P005F081R1_039.ab1   (51)   370     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C MoSU012R_E05_BF474966Td05P020A06P005F081R1_039.ab1   421 
   63    MoSU012F_E05_BF474966Td05P020A06P005F081F1_039.ab1    20 
   83  C MoSU012R_E05_BF474966Td05P020A06P005F081R1_039.ab1   339 
   91    MoSU012F_E05_BF474966Td05P020A06P005F081F1_039.ab1    48 
  107  C MoSU012R_E05_BF474966Td05P020A06P005F081R1_039.ab1   315 
  111    MoSU012F_E05_BF474966Td05P020A06P005F081F1_039.ab1    68 
  163  C MoSU012R_E05_BF474966Td05P020A06P005F081R1_039.ab1   259 
  167    MoSU012F_E05_BF474966Td05P020A06P005F081F1_039.ab1   124 
Contig length: old 458, new 459

Contig length: old 459, new 459
New start: 0