No. words: 1385; after pruning: 1359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:652)  633  0.00 0.00 0.15  MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1        1   653 (34)  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   (46)   652     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   698 
   54    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1     8 
   62  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   637 
   70    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1    24 
   74  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   625 
   78    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1    32 
   86  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   613 
   94    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1    48 
  110  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   589 
  130    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1    84 
  150  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   549 
  310    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   264 
  318  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   381 
  490    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   444 
  506  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   193 
  522    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   476 
  530  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   169 
  546    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   500 
  558  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   141 
  570    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   524 
  582  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1   117 
  654    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   608 
  658  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1    41 
  666    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   620 
  670  C MoSU023R_D01_BF475129As02P018B06P018B121R1_009.ab1    29 
  674    MoSU023F_D01_BF475129As02P018B06P018B121F1_009.ab1   628 
Contig length: old 732, new 733

Contig length: old 733, new 733
New start: 0