No. words: 1407; after pruning: 1381


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:657)  637  0.00 0.00 0.15  MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1        1   658 (44)  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   (48)   657     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   705 
   64    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1    16 
   72  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   634 
   76    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1    28 
   80  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   626 
   84    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1    36 
  124  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   582 
  136    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1    88 
  164  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   542 
  212    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   164 
  280  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   426 
  332    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   284 
  340  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   366 
  448    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   400 
  468  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   238 
  496    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   448 
  508  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   198 
  540    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   492 
  556  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   150 
  564    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   516 
  568  C MoSU023R_F01_BF475129At02P018B06P018B121R1_005.ab1   138 
  684    MoSU023F_F01_BF475129At02P018B06P018B121F1_005.ab1   636 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0