No. words: 1580; after pruning: 1554


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:662)  643  0.30 0.00 0.00  MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1        1   663 (144)  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   (110)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   773 
  118    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1     8 
  134  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   640 
  138    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1    28 
  178  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   596 
  182    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1    72 
  190  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   584 
  210    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1   100 
  250  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   524 
  278    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1   168 
  314  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   460 
  566    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1   456 
  658  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1   116 
  666    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1   556 
  745  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1    29 
  749    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1   639 
  757  C MoSU023R_A02_BF475129Ld03P018B06P018B121R1_016.ab1    17 
  765    MoSU023F_A02_BF475129Ld03P018B06P018B121F1_016.ab1   655 
Contig length: old 917, new 917

Contig length: old 917, new 917
New start: 0