No. words: 1469; after pruning: 1443


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:660)  628  0.91 0.00 0.00  MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1        1   661 (144)  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1   (3)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1   664 
    7    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1     4 
  557  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1   108 
  577    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1   574 
  581  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1    84 
  589    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1   586 
  597  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1    68 
  601    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1   598 
  627  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1    38 
  631    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1   628 
  635  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1    30 
  643    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1   640 
  651  C MoSU023R_F02_BF475129Ld08P018B06P018B121R1_006.ab1    14 
  659    MoSU023F_F02_BF475129Ld08P018B06P018B121F1_006.ab1   656 
Contig length: old 808, new 808

Contig length: old 808, new 808
New start: 0