No. words: 1637; after pruning: 1611


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:660)  644  0.15 0.00 0.00  MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1        1   661 (151)  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1   (164)   661     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1   825 
  172    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1     8 
  188  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1   638 
  209    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1    45 
  213  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1   613 
  233    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1    69 
  237  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1   589 
  649    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1   485 
  785  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1    41 
  789    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1   625 
  793  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1    33 
  801    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1   637 
  809  C MoSU023R_G02_BF475129Ld09P018B06P018B121R1_004.ab1    17 
  813    MoSU023F_G02_BF475129Ld09P018B06P018B121F1_004.ab1   649 
Contig length: old 976, new 976

Contig length: old 976, new 976
New start: 0