No. words: 1532; after pruning: 1492


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 12.5 (1,1:728)  681  0.42 0.00 0.14  MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1        9   729 (27)  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   (56)   720     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   776 
   64    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1    16 
   68  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   709 
  117    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1    69 
  121  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   656 
  161    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   113 
  185  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   592 
  197    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   149 
  257  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   520 
  261    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   213 
  305  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   472 
  317    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   269 
  329  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   448 
  333    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   285 
  385  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   392 
  389    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   341 
  405  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   372 
  661    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   613 
  673  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1   104 
  681    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   633 
  685  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1    92 
  717    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   669 
  729  C MoSU034R_F03_BF482529At02P019G01P019G071R1_021.ab1    48 
  737    MoSU034F_F03_BF482529At02P019G01P019G071F1_021.ab1   689 
Contig length: old 803, new 804

Contig length: old 804, new 804
New start: 0