No. words: 1716; after pruning: 1676


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:740)  685  0.40 0.27 0.27  MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1        1   742 (142)  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   (90)   742     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   832 
  172    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1    80 
  176  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   657 
  200    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   108 
  260  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   573 
  352    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   260 
  356  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   477 
  428    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   336 
  432  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   401 
  516    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   424 
  556  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   277 
  576    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   484 
  588  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   245 
  596    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   504 
  600  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   233 
  624    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   532 
  628  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   205 
  719    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   627 
  731  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1   102 
  735    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   643 
  755  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1    78 
  779    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   687 
  791  C MoSU034R_H03_BF482529Ld02P019G01P019G071R1_017.ab1    42 
  803    MoSU034F_H03_BF482529Ld02P019G01P019G071F1_017.ab1   711 
Contig length: old 975, new 976

Contig length: old 976, new 976
New start: 0