No. words: 1717; after pruning: 1677


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.0 (1,1:739)  687  0.13 0.40 0.27  MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1        1   741 (150)  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   (84)   742     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   826 
  122    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1    35 
  130  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   697 
  142    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1    55 
  150  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   677 
  154    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1    67 
  166  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   661 
  574    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1   487 
  578  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   249 
  713    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1   626 
  725  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1   102 
  729    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1   642 
  733  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1    94 
  749    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1   662 
  753  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1    74 
  769    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1   682 
  785  C MoSU034R_C04_BF482529Ld05P019G01P019G071R1_028.ab1    42 
  797    MoSU034F_C04_BF482529Ld05P019G01P019G071F1_028.ab1   710 
Contig length: old 977, new 978

Contig length: old 978, new 978
New start: 0