No. words: 1161; after pruning: 1135


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:417)  403  0.00 0.00 0.00  MoSU008F_B12_BF482530Ld03P005C06C121F1_094.ab1        1   418 (161)  C MoSU008R_B12_BF482530Ld03P005C06C121R1_094.ab1   (164)   418     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C MoSU008R_B12_BF482530Ld03P005C06C121R1_094.ab1   582 
  428    MoSU008F_B12_BF482530Ld03P005C06C121F1_094.ab1   264 
  536  C MoSU008R_B12_BF482530Ld03P005C06C121R1_094.ab1    47 
  540    MoSU008F_B12_BF482530Ld03P005C06C121F1_094.ab1   376 
Contig length: old 743, new 743

Contig length: old 743, new 743
New start: 0