No. words: 1196; after pruning: 1170


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:434)  421  0.00 0.00 0.00  MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1        1   435 (162)  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   (164)   435     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   599 
  196    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1    32 
  204  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   396 
  240    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1    76 
  296  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   304 
  308    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   144 
  324  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   276 
  328    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   164 
  368  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   232 
  404    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   240 
  456  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   144 
  460    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   296 
  472  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1   128 
  496    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   332 
  516  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1    84 
  524    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   360 
  540  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1    60 
  544    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   380 
  556  C MoSU008R_C12_BF482530Ld04P005C06C121R1_092.ab1    44 
  560    MoSU008F_C12_BF482530Ld04P005C06C121F1_092.ab1   396 
Contig length: old 761, new 761

Contig length: old 761, new 761
New start: 0