No. words: 1187; after pruning: 1161


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:424)  406  0.24 0.24 0.00  MoSU008F_D12_BF482530Ld05P005C06C121F1_090.ab1        1   425 (171)  C MoSU008R_D12_BF482530Ld05P005C06C121R1_090.ab1   (165)   426     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C MoSU008R_D12_BF482530Ld05P005C06C121R1_090.ab1   591 
  255    MoSU008F_D12_BF482530Ld05P005C06C121F1_090.ab1    89 
  263  C MoSU008R_D12_BF482530Ld05P005C06C121R1_090.ab1   329 
  335    MoSU008F_D12_BF482530Ld05P005C06C121F1_090.ab1   169 
  367  C MoSU008R_D12_BF482530Ld05P005C06C121R1_090.ab1   225 
  447    MoSU008F_D12_BF482530Ld05P005C06C121F1_090.ab1   281 
Contig length: old 762, new 762

Contig length: old 762, new 762
New start: 0